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This is Me

My name is Marcell0 and I am a passionate bioinformatician working at the University of York. On the daily, I explore the genomic landscape of bladder cancer. Outside work I enjoy parkour, climbing, and low-level coding.

This blog is where I share my thoughts and experiences on technologies in bioinformatics, interesting frameworks, tools review and more!

About Me

  • 🧬 Bioinformatician at the University of York Mason Lab with focus pipeline development, genomics data processing and analysis.
  • 🌐 Interested in exploring low level tool development for bioinformatics.
  • 🔭 Focus on custom performant and reproducible pipelines in Nextflow.
  • 🎓 Bachelor’s degree in Microbiology. Master’s degree in Bioinformatics

Projects and Languages

Here are a few projects I’ve been working on:

  • rocketfasta: A CLI parser for fasta files written in C++.
  • VCF annotator: A VCF annotator written in Python for with bindings to the Open Cravat API.
  • Hazexplorer: A nextflow pipeline to carry out bisulphite sequence analysis and variant calling.
  • LamaRizer: A CLI application to run locally hosted models and extract information from websearches and documents focusing on privacy.

Get in Touch

Feel free to reach out if you have any questions, suggestions, consultancy requests or collaboration ideas!

Enjoy! 😊